python main.py Fig.S5C_FRDA_d5_ABE1_S12_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d5_ABE1_S12_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d5_ABE2_S13_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d5_ABE2_S13_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d5_unrelated-rep1_S77_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d5_unrelated-rep1_S77_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d5_unrelated-rep2_S78_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d5_unrelated-rep2_S78_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d12_ABE1_S54_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d12_ABE1_S54_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d12_ABE2_S55_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d12_ABE2_S55_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16_ABE1_S43_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16_ABE1_S43_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16_ABE2_S44_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16_ABE2_S44_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16-ABE1_S19_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16-ABE1_S19_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16-ABE2_S53_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16-ABE2_S53_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16-ABE3_S21_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16-ABE3_S21_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16-unrelated1_S25_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16-unrelated1_S25_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16-unrelated2_S26_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16-unrelated2_S26_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S5C_FRDA_d16-unrelated3_S27_L001_R1_001.fastq.gz out/Fig.S5C_FRDA_d16-unrelated3_S27_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
